Indonesia's main religion is Islam, that should give you a clue about the availability of areas like Nana Plaza, Pattaya Walking Street, Phuket's Soi Bangla there. There are ladyboys there, however, it is not organized, and more "rough" than Thailand. The exception may be Bali, where the main religion is Hindu.
Here are some threads about Indonesia - they are old, and the reason why there isn't much information is due to the Islamic influence.
Looking for hot ladyboys in Jakarta, Needle in a Jakarta haystack.
You can also try Vicesister's.com as there are some Indonesian lb escorts advertising there, Craig's list and Backpage are also possibilities.